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International Journal of World Medicine, 2022, 3(1); doi: 10.38007/IJWM.2022.030101.

Probe into Mechanism of Treatment of Ulcerative Colitis by Using Network Pharmacology and Molecular Docking Techniques

Author(s)

Dongxue Yan and Zhihong Yang

Corresponding Author:
Zhihong Yang
Affiliation(s)

Affiliated Hospital of Shaanxi University of Chinese Medicine, Xianyang 712000, China

Abstract

The main compounds and targets of herbal medicine of Chun genpi and Di jincao in the treatment of ulcerative colitis were studied by network pharmacology and molecular docking techniques, and the mechanism of its therapeutic effect was analyzed. Drug active components and drug targets were screened by TCMSP database, UC disease genes were searched by Genecards and OMIM databases, and the relationship network of "compound-drug target-disease gene" was constructed. The DAVID database could analyze the GO of the candidate targets and the R language package could analyze the biological pathway enrichment of the candidate targets. Molecular docking was carried out by Autodock software, and the binding sites and binding energy were obtained. There are 16 active compounds corresponding to 314 targets in the drug pair. 102 genes of UC disease are affected. 570 GO items were screened by GO functional analysis of intersection targets, including 444 items in biological process, 43 items in cell composition and 83 items in molecular function. 163 pathways were screened by KEGG. The results of molecular docking show that the key targets have good binding activity with the corresponding compounds. The drug pair has the characteristics of multi-component, multi-target and multi-pathway in the treatment of UC. It provides a theoretical basis for the further study of the drug pair in the treatment of UC.

Keywords

Herbal Medicine of Chun Genpipi and Di Jincao, Ulcerative Colitis, Network Pharmacology, Molecular Docking

Cite This Paper

Dongxue Yan and Zhihong Yang. Probe into Mechanism of Treatment of Ulcerative Colitis by Using Network Pharmacology and Molecular Docking Techniques. International Journal of World Medicine (2022), Vol. 3, Issue 1: 1-12. https://doi.org/10.38007/IJWM.2022.030101.

References

[1] Stelios F Assimakopoulos,Ismini Papageorgiou,Aristidis Charonis.Enterocytes’tight junctions:From molecules to diseases.World Journal of Gastrointestinal Pathophysiology,2011,2(06):123-137.

[2] Chang Si Bridge. Study on extraction, isolation, fermentation characteristics in vitro and protective effect on ulcerative colitis of Euphorbia angustifolia polysaccharides . Southern Medical University, 2021.

[3] Shen Hong, Tang Zhipeng, Tang Xudong, Zhang Lu, Liu Yajun, Ye Bai, Wen Yandong, Wang Fengyun, Lu Lin. Guidelines for TCM diagnosis and treatment of ulcerative colitis, a common disease of the digestive system (grass-roots doctor version) . Chinese Journal of traditional Chinese Medicine, 2019. 34 (09): 4155-4160.

[4] Lin Wencheng. Analysis of clinical effect of Qingre Yukui decoction on mild to moderate ulcerative colitis (damp-heat type of large intestine) . Fujian University of traditional Chinese Medicine, 2021.

[5] Zhou Honghe, Yan Yong, Wang Fang. Research progress of Pueraria lobata and Radix Rehmanniae in the treatment of diarrhea and dehydration . Electronic Journal of Clinical Medical Literature, 2015 Journal 2 (19): 4061.

[6] Zhu Ying. Research Progress of Euphorbia angustifolia . Research and practice of Modern traditional Chinese Medicine. 2003(05):62-63.

[7] Qian Juan. Study on the effect and mechanism of Toona sinensis extract on digestive tract tumor . Nanjing University of traditional Chinese Medicine, 2012.

[8] Zhu Yufeng, Zhou Qinmei, Feng Guobing, Song Jinbin, Yu Xiaotao. Comparison of in vitro antibacterial activity between Toona sinensis skin and Toona sinensis bark . Chinese Modern Applied Pharmacy, 1999 (06): 19-21.

[9] Niu Ming, Zhang Shiqin, Zhang Bo, Yang Zuang, Li Zhao. interpretation of the Guide to Evaluation methods of Network Pharmacology . Chinese Herbal Medicine, 2021 552 (14): 4119-4129.

[10] Tian-yang Wang,Qing Li,Kai-shun Bi.Bioactive flavonoids in medicinal plants:Structure, activity and biological fate.Asian Journal of Pharmaceutical Sciences,2018,13(01):12-23.

[11] Si Lijun, Wang Xue, Wang Linlin, Huang Hua. Study on anti-inflammatory immunity and partial mechanism of quercetin . China Medical Journal, 2021, 18 (27): 26-29, 34.

[12] Sun Y, Liu WZ ;Liu T ,et al ,Signaling pathway of MAPK/ERK in cell proliferation, differentiation, migration, senescence and apoptosis . Journal of Receptor & SignalTransduction Research.2015,35(6):600-604.

[13] Zhu Xiangdong, Duan Yongqiang, Wang Yan, Wang Bin, Cao Yanfei. Effect of Tongxieyao recipe on ERK1 and ERK2 gene expression in colonic mucosa of rats with ulcerative colitis . Journal of Nanjing University of traditional Chinese Medicine, 2013J.29 (04): 347-350.

[14] Song ailing. The relationship between TNF-α, IL-6, IL-8 and the severity of ulcerative colitis . Chinese practical Medicine, 2008 pr. 3 (36): 3-4.

[15] Li Junhui, Huang Jun, Xu Xiaohong, Yuan Yanyan. Effect of sulfasalazine combined with Bacillus licheniformis on serum inflammatory factors in patients with ulcerative colitis . Drug Evaluation study, 2020. 43 (11): 2280-2283.

[16] Wang Qianqian, Zhu Lingjun. VEGF/VEGFR signal pathway and anti-VEGF targeted therapy for colorectal cancer . Modern Oncology, 2016 pr 24 (21): 3491-3495.

[17] Hu Zongren, Zheng Wenjiang, Yan Qian, Hu Weiwei, Sun Xiaosheng. Bioinformatics analysis of differentially expressed genes and prediction of traditional Chinese medicine in ulcerative colitis . Chinese Journal of traditional Chinese Medicine, 20200.45 (07): 1684-1690.

[18] Zhang Yang, Li Xiaojun. Effects of endostatin combined with mannanopeptide intrapleural infusion on MMP-9 and VEGF in serum and pleural effusion of patients with non-small cell lung cancer with malignant pleural effusion. Hainan Medicine, 2020 and 31 (03): 302-305.

[19] Shi Yuanyuan, Wu Jiannong, Lu Mingzhi, Wang Kun. Expression of Akt1 and ARK5 in breast cancer and its clinicopathological significance. Journal of Diagnostic Pathology, 2021, 28 (03): 189-193.

[20] Wang Wei, Blibu Gillishan, Xu Chunlei, Saifuding Ke Yumu. Study on the relationship between serum CCL2, ANXA2 and invasive growth of cancer cells in patients with gastric cancer . Chinese Journal of Cell Biology, 2021 Journal 43 (02): 404-412.

[21] Liu Hengchen, Zhang Xinyu. Research progress of Toll-like receptor signaling pathway as a potential therapeutic target for colorectal cancer . Journal of practical Oncology, 2019, 33,02: 188-192.

[22] Cheng Haifei, Chen Yanlin, Fan Shaohui, Yang Maoxiang, Li Youxia, Wang Hongxia. Research progress of MAPK signal pathway in the process of acute lung injury . Medical Review, 2020, 26 (13): 2523-2528.

[23] Hommes D, Blink B V D, Plasse T, Bartelsman J,et al. Inhibition of stress-activated MAP kinases induces clinical improvement in moderate to severe Crohn's disease. Gastroenterology 2002;122:7-14.

[24] Hao Lei, Wu Yang, Li Yuanyuan, Qiao Fei, Zi Nan, Zhang Wei, Wu Jieqiong. Study on the mechanism of astragaloside IV in treating ulcerative colitis model rats . Chinese Journal of practical diagnosis and Therapy, 20119 Journal 33 (05): 439-442.

[25] Lasson A,Stotzer PO,Ohman L,et al.The intra-individual variability of faecal calprotectin: a prospective study inpatients with active ulcerative colitis..J Crohn Colitis,2015,9(1):26-32.

[26] Xie Jingri, Xu Mingyue, Liu Zhaoxia. The role of tumor necrosis factor-α in ulcerative colitis . Liaoning Journal of traditional Chinese Medicine, 2012 Magazine 39 (10): 1887-1888.

[27] Miao Zhiwei. Study on the mechanism of Baitouweng decoction in the treatment of ulcerative colitis and clinical evaluation of newly added Baitouweng decoction . Nanjing University of traditional Chinese Medicine, 2020.

[28] Li T, Wang P, Guo W, et al. Natural berberine-based Chinese herb medicine assembled nanostructures with modified antibacterial application. ACS Nano, 2019, 13(6):6770-6781.